LOC_0001ZJW.1

Submission details

Submission ID

E3_15_2025_02_06RSV-A

Submitting group

WISE

Date submitted

2025-03-05 15:21:24 UTC

Date released

2025-03-05 15:21:43 UTC

Metadata

Date

2025-02-06

Location

Basel

Primer protocol

Eawag-2024-RSV subtype A and B

Reference

RSV-A

Frequencies

Nucleotide mutation frequency

{"A10052G": null, "A1009G": null, "A10208G": null, "A1021G": null, "A10343G": null, "A10406G": null, "A10421T": null, "A10457G": null, "A10466G": null, "A1051C": null, "A10649G": null, "A1078G": null, "A1080G": null, "A10838T": 0.0, "A10890C": 0.0, "A10907G": 0.0, "A10910G": 0.0, "A11045G": 0.0, "A11093G": 0.0, "A11099G": 0.0, "A1110G": null, "A11174G": null, "A11237G": null, "A11531G": 0.0, "A11771G": null, "A11867G": null, "A11871G": null, "A11939G": null, "A12098G": null, "A12314G": null, "A12314T": null, "A12473G": 0.0, "A12476T": 0.9983810186386108, "A12491G": 0.0, "A12569C": 0.0, "A1263G": null, "A12653G": 0.0, "A12668G": 0.0, "A12689G": 0.0, "A12746G": 0.9993950128555298, "A12756C": 0.0, "A12932G": null, "A13280G": 0.0, "A13313G": 0.0, "A13331G": 0.0, "A13334G": 0.0, "A13337G": 0.0, "A13382G": 1.0, "A13394G": 0.9841269850730896, "A13451G": 0.0, "A13488G": 1.0, "A13497G": 0.0, "A13514C": 1.0, "A1360G": null, "A1361G": null, "A13699G": null, "A13705G": null, "A13708G": null, "A13763T": null, "A13774G": null, "A13869G": 0.0, "A13895G": 0.0, "A13929G": 0.0, "A1392G": null, "A14025C": 0.0, "A14108G": 0.0, "A14120G": 0.0, "A14123G": 0.0, "A14145C": 0.0, "A1420G": null, "A14391C": 0.0, "A14411G": 0.9996979832649231, "A14513G": 0.0, "A14519G": 0.0, "A14588G": 0.0, "A14624T": 0.0, "A14627G": 0.0, "A14678G": null, "A14722G": null, "A14726G": null, "A14736G": null, "A1476G": 0.0, "A1518G": 0.0, "A1533G": 0.0, "A1650G": 0.0, "A1713G": 0.0, "A2214G": 0.0, "A2277T": 0.0, "A2297G": 0.3187499940395355, "A2323C": 0.0, "A2392G": 0.3694950044155121, "A2412G": 0.0, "A2544G": 0.0, "A2560G": 0.0, "A2572C": 0.0, "A2584G": 0.0, "A2596C": 0.0, "A2695G": 1.0, "A2698G": 0.0, "A2755G": 0.0, "A3034T": null, "A3083T": null, "A3085G": null, "A3092G": null, "A3156G": null, "A3169C": null, "A3169T": null, "A3184G": null, "A3185G": null, "A3299G": 0.0, "A3366G": 0.0, "A3378G": 0.0, "A3381G": 0.0, "A3407C": 0.0, "A3426C": 0.0, "A3442C": 0.0, "A3453G": 0.0, "A3462T": 0.0, "A3522G": 0.0, "A3564G": 0.9966449737548828, "A3576G": 0.0, "A3642C": 0.0, "A3642T": 0.0, "A3663G": null, "A3684G": null, "A3687C": null, "A3751T": null, "A3766G": null, "A3825G": null, "A3840G": null, "A3873T": null, "A3882G": null, "A3915G": 0.0, "A4027G": 0.0, "A4092G": 0.0, "A4098T": 0.0, "A4103G": 0.915215015411377, "A4153G": 0.0, "A4361C": null, "A4506G": 0.0060259997844696045, "A4527G": 0.0, "A4587T": 0.0, "A4687T": 0.9929149746894836, "A4693G": 0.005803000181913376, "A4720G": 0.9934939742088318, "A4732T": 0.0, "A5019G": null, "A5041T": null, "A5065G": null, "A5070G": null, "A5071G": null, "A5125G": null, "A5183G": null, "A5184G": null, "A5263G": null, "A5266G": null, "A5277G": null, "A5290G": null, "A5313G": null, "A5342G": null, "A5366G": null, "A5376C": null, "A5415G": null, "A5428G": null, "A5435G": null, "A5444C": null, "A5448T": null, "A5502G": null, "A5512G": 0.0, "A5535T": 0.0, "A5586T": 0.0, "A5587G": 0.0, "A5599C": 0.0, "A5599G": 0.0, "A5606G": 0.0, "A5609G": 0.38603898882865906, "A5612G": 0.0, "A5612T": 0.0, "A5626T": 0.0, "A5662T": 0.0, "A5747C": 0.0, "A5786G": 0.0, "A5801G": 0.39305299520492554, "A6060G": null, "A6101G": 0.0, "A6284G": 0.0, "A6431T": null, "A6467G": null, "A6644G": null, "A6716G": null, "A6716T": null, "A7085G": null, "A7103T": null, "A7112G": null, "A7115C": null, "A7169G": null, "A7205G": null, "A7219G": null, "A7223C": null, "A7433C": 0.0, "A7487C": 0.997048020362854, "A7491G": 0.0, "A7560G": 0.0, "A7568G": 0.0, "A8101G": 0.0, "A8116G": 0.0, "A8160G": 0.0, "A8173G": 0.9933919906616211, "A8177G": 0.0, "A8189G": 0.0, "A8269G": 0.9995800256729126, "A8334T": 0.0, "A8345G": 0.0, "A8383G": null, "A8427G": null, "A8471G": null, "A8480G": null, "A8487G": null, "A8512T": null, "A8573C": null, "A8573G": null, "A8573T": null, "A8693T": null, "A8758G": null, "A9050G": null, "A9066G": null, "A9066T": null, "A9119G": null, "A940C": null, "A9626T": null, "A9665G": null, "A9719G": null, "A9842G": null, "A992G": null, "C10015A": null, "C10019T": null, "C1012T": null, "C10301T": null, "C10328T": null, "C10358T": null, "C1046A": null, "C1046T": null, "C1047T": null, "C10530T": null, "C10622T": null, "C10814T": 0.0, "C10862T": 0.0, "C10875T": 0.0, "C10994A": 0.9987509846687317, "C11000T": 0.0, "C11159T": null, "C11192T": null, "C11216T": null, "C11234T": null, "C11375T": 0.6000000238418579, "C11477T": 0.6140350103378296, "C11504T": 0.0, "C11543T": 0.35327601432800293, "C11657T": 0.0, "C11891T": null, "C11895T": null, "C11921T": null, "C11999A": null, "C12026T": null, "C1203T": null, "C12146T": null, "C12161T": null, "C12549T": 0.0, "C12641T": 0.0, "C12692T": 0.0, "C12707T": 0.9768289923667908, "C12710T": 0.9957680106163025, "C12929T": null, "C13517T": 0.0, "C13619T": null, "C13680T": null, "C13748T": null, "C13897T": 0.0, "C14163T": 0.0, "C14356T": 0.0, "C14363T": 0.0, "C14408T": 0.0, "C14414T": 0.0, "C14417T": 0.9974340200424194, "C14555A": 0.5053409934043884, "C14582T": 0.0, "C14619T": 0.0, "C14630T": 0.0, "C14714T": null, "C14861T": null, "C1547G": 0.0, "C1677T": 0.0, "C1788T": 0.995976984500885, "C1806T": 0.9996500015258789, "C1809A": 0.5473629832267761, "C2181T": 0.0, "C2244T": 0.0, "C2378T": 0.0, "C2395A": 0.0, "C2395T": 0.04916499927639961, "C2410T": 0.04950999841094017, "C2417T": 0.0, "C2479T": null, "C2509T": 0.0, "C2523T": 0.0, "C2532T": 0.0, "C2542T": 0.0, "C2548A": 0.0, "C2592T": 1.0, "C2623T": 0.0, "C2650T": 0.0, "C2767T": 0.0, "C2860T": 0.0, "C2911T": 0.0, "C2965T": 0.0, "C2993T": 0.0, "C3023T": null, "C3052T": null, "C3061T": null, "C3064A": null, "C3076T": null, "C3087T": null, "C3099T": null, "C3108T": null, "C3112T": null, "C3117T": null, "C3125T": null, "C3148A": null, "C3155T": null, "C3168T": null, "C3180A": null, "C3182T": null, "C3303T": 0.0, "C3306T": 0.9951959848403931, "C3342T": 0.0, "C3351T": 0.5204330086708069, "C3384T": 0.0, "C3390T": 0.0, "C3397T": 0.0, "C3420T": 0.0, "C3429A": 0.5171219706535339, "C3480T": 0.0, "C3501T": 0.4793750047683716, "C3552T": 0.0, "C3624T": 0.9995589852333069, "C3636A": 0.0, "C3714T": null, "C3729T": null, "C3816T": null, "C3837T": null, "C3864T": null, "C3912T": 0.0, "C3927T": 0.07989499717950821, "C3984T": 0.08049000054597855, "C4026T": 0.0, "C4037T": 0.9965069890022278, "C4039T": 0.9973840117454529, "C4049T": 0.9175950288772583, "C4079T": 0.08440099656581879, "C4127T": 0.0, "C4149T": 0.0, "C4179T": 0.0, "C4194T": 0.0, "C4208T": 0.0, "C4216A": 0.08670499920845032, "C4221T": 0.9122440218925476, "C4242T": 0.0, "C4249A": 0.0, "C4307T": null, "C4316T": null, "C4323T": null, "C4373T": null, "C4397T": null, "C4400T": null, "C4427T": 0.98716801404953, "C4434T": 0.0, "C4440A": 0.9996950030326843, "C4486T": 0.0, "C4523T": 0.0, "C4558T": 0.0, "C4559T": 0.9919999837875366, "C4570A": 0.0, "C4571T": 0.0061039999127388, "C4624T": 0.0, "C4651G": 0.02281999960541725, "C4678T": 0.0, "C4681A": 0.0, "C4681T": 0.0, "C4705T": 0.006180999800562859, "C4850A": null, "C4863T": null, "C4919T": null, "C4952T": null, "C4984T": null, "C4989T": null, "C5004T": null, "C5010T": null, "C5026T": null, "C5058T": null, "C5067T": null, "C5078T": null, "C5079T": null, "C5089A": null, "C5203A": null, "C5203T": null, "C5268A": null, "C5272T": null, "C5296T": null, "C5301T": null, "C5310T": null, "C5316T": null, "C5327T": null, "C5335T": null, "C5352T": null, "C5374A": null, "C5380T": null, "C5393A": null, "C5404G": null, "C5425A": null, "C5425T": null, "C5461A": null, "C5477T": null, "C5478T": null, "C5500T": null, "C5539T": 0.3154729902744293, "C5544T": 0.0, "C5578T": 0.0, "C5589T": 0.0, "C5605T": 0.0, "C5607A": 0.0, "C5607T": 0.3855710029602051, "C5650T": 0.3161199986934662, "C5655T": 0.0, "C5661A": 0.606473982334137, "C5677T": 0.2879680097103119, "C5680T": 0.0, "C5711T": 0.0, "C5714T": 0.0, "C5731T": 0.6077359914779663, "C5738T": 0.0, "C5739T": 0.0, "C5750T": 0.7115899920463562, "C5780T": 0.0, "C5915T": null, "C6005A": null, "C6030T": null, "C6059T": null, "C6140T": 0.0, "C6263T": 0.0, "C6521A": null, "C6653T": null, "C6657T": null, "C6686T": null, "C7249T": null, "C7367T": 0.0, "C7386T": 0.0, "C7403T": 0.9994080066680908, "C7434T": 0.0, "C7458T": 0.0, "C7468A": 0.0, "C7468T": 0.0, "C7478T": 0.0, "C7514T": 0.0, "C7566A": 0.0, "C7606A": 0.0, "C7610A": 0.0, "C7666T": 0.0, "C7987T": 0.0, "C8050T": 0.0, "C8077T": 0.0, "C8122T": 0.0, "C8143T": 0.0, "C8194T": 0.0, "C8309T": 0.0, "C8321T": 0.0, "C8330T": 0.0, "C8418A": null, "C8468T": null, "C8470T": null, "C8475T": null, "C8481T": null, "C8486T": null, "C8494A": null, "C8618T": null, "C8738T": null, "C9015T": null, "C9043T": null, "C904T": null, "C952T": null, "C9632T": null, "C9716T": null, "C983A": null, "C9875T": null, "C990A": null, "C9962T": null, "C9989T": null, "G1000A": null, "G10151A": null, "G1034A": null, "G1049A": null, "G1050A": null, "G10776T": 0.0, "G1077A": null, "G10793A": 0.0, "G10826A": 0.0, "G11120A": 1.0, "G11123A": 1.0, "G1131A": null, "G11666A": 0.3485710024833679, "G11768A": null, "G11780A": null, "G11786A": null, "G11894A": null, "G12206A": null, "G12263A": null, "G12296A": null, "G12386A": null, "G1248A": null, "G12542A": 0.0, "G13274A": 0.0, "G1368A": null, "G13691A": null, "G13692A": null, "G13723A": null, "G13729A": null, "G13734A": null, "G1383A": null, "G13850A": 0.0, "G14036A": 0.0, "G14126A": 0.0, "G14348A": 0.0, "G14358A": 0.0, "G14534A": 0.0, "G14577A": 0.0, "G14873A": null, "G14881A": null, "G1584T": 0.05180099979043007, "G1662A": 0.5518730282783508, "G1848A": null, "G2196A": 0.0, "G2238A": 0.0, "G2298A": 0.0, "G2539A": 0.0, "G2593A": 0.0, "G2782A": 0.0, "G2806A": 0.0, "G2980A": 0.0, "G3082T": null, "G3130A": null, "G3146A": null, "G3183A": null, "G3354A": 0.5206789970397949, "G3402A": 0.4603259861469269, "G3402T": 0.0, "G3531A": 0.48050299286842346, "G3531C": 0.0, "G3616A": 0.0, "G3616C": 0.0, "G4019A": 0.0, "G4081A": 0.0, "G4083A": 0.0, "G4111A": 0.08418300002813339, "G4145A": 0.0, "G4244A": 1.0, "G4248A": 0.0, "G4248T": 0.0, "G4252A": 0.0, "G4474A": 0.9939500093460083, "G4488A": 0.9942600131034851, "G4496A": 0.0069320001639425755, "G4595T": 0.0, "G4621A": 0.0, "G4950A": null, "G4963A": null, "G4967A": null, "G4968A": null, "G5013T": null, "G5020A": null, "G5082T": null, "G5212A": null, "G5254A": null, "G5322A": null, "G5322C": null, "G5322T": null, "G5338A": null, "G5345A": null, "G5379C": null, "G5379T": null, "G5412A": null, "G5466A": null, "G5507A": 0.6000000238418579, "G5534A": 0.0, "G5537A": 0.0, "G5547A": 0.0, "G5558A": 0.0, "G5575A": 0.0, "G5631A": 0.31590399146080017, "G5633A": 0.38968199491500854, "G5647A": 0.9981809854507446, "G5648A": 0.29003599286079407, "G5702T": 0.0, "G5763A": 0.0, "G5981A": null, "G6003A": null, "G6075A": 0.0, "G6119A": 0.0, "G6182A": 0.0, "G6269A": 0.0, "G6302A": 0.0, "G6523A": null, "G7037A": null, "G7046A": null, "G7199A": null, "G7455A": 0.0, "G7492A": 0.0, "G7592A": 0.0, "G7624A": 0.0, "G7698A": 0.0, "G7984A": 0.0, "G8020A": 0.0, "G8056A": 0.9972389936447144, "G8059A": 0.9991509914398193, "G8191A": 0.0, "G8329A": 0.9987220168113708, "G8459A": null, "G8750A": null, "G9026A": null, "G9068A": null, "G9178A": null, "G9250A": null, "G9298A": null, "G9341A": null, "G9758A": null, "G9893A": null, "T10016C": null, "T10034C": null, "T1004C": null, "T10076C": null, "T10193C": null, "T1019C": null, "T1028C": null, "T10323C": null, "T1032C": null, "T10346C": null, "T10352C": null, "T1035A": null, "T1048C": null, "T10505C": null, "T10565C": null, "T10607C": null, "T10610C": null, "T10802C": 0.0, "T10850C": 0.9991859793663025, "T10859C": 0.9922760128974915, "T10955C": 0.0, "T10958C": 0.0, "T11034A": 0.0, "T11105G": 0.0, "T11135C": 0.0, "T11219C": null, "T11315C": 0.0, "T11354C": 0.0, "T11447C": 0.0, "T11489A": 0.5914829969406128, "T11579C": 0.3485710024833679, "T11615A": 0.0, "T11621C": 0.0, "T12149A": null, "T12185C": null, "T12239C": null, "T1224C": null, "T12356C": null, "T1242C": null, "T1245C": null, "T12494C": 0.0, "T1254C": null, "T12572C": 0.0, "T12611C": 0.0, "T12635C": 0.0, "T12737C": 0.0, "T12740C": 0.0, "T12782C": 0.0, "T1281C": null, "T12844A": null, "T1284C": null, "T12893C": null, "T13307C": 0.0, "T13463A": 0.0, "T1359C": null, "T13601A": 0.0, "T13700C": null, "T13730C": null, "T13799A": null, "T1380C": null, "T13862C": 0.0, "T13883A": 0.0, "T13883C": 0.0, "T13913C": 0.0, "T13922C": 0.0, "T13958G": 0.0, "T13973C": 0.0, "T13988C": 0.9850749969482422, "T14039C": 0.0, "T14117C": 0.9869130253791809, "T14138A": 0.0, "T1413A": null, "T1422C": null, "T14359A": 0.0, "T14369C": 0.0, "T14396C": 0.0, "T1443C": null, "T14459C": 0.5085170269012451, "T14517C": 0.0, "T14522C": 0.9925829768180847, "T14529C": 0.0, "T14558C": 0.0, "T14567C": 0.49547600746154785, "T14576C": 0.0, "T14660C": 0.5028070211410522, "T14795C": null, "T14924C": null, "T1644C": 0.0, "T1653C": 0.0, "T1668C": 0.5510029792785645, "T1671C": 0.5526649951934814, "T1707C": 0.0, "T1708C": 0.0, "T1756C": 0.0, "T1785C": 0.0, "T1791C": 0.0, "T1821C": 0.0, "T1935C": null, "T1980C": null, "T2127C": 0.0, "T2139C": 0.0, "T2145C": 0.0, "T2146C": 0.0, "T2154C": 0.0, "T2165C": 0.9990800023078918, "T2212C": 0.0, "T2218C": 0.0, "T2268C": 0.0, "T2316A": 0.0, "T2416C": 0.04904299974441528, "T2431C": 0.0, "T2434C": 0.0, "T2458C": 0.0, "T2481C": null, "T2482C": null, "T2495C": 0.0, "T2502C": 0.0, "T2503C": 0.0, "T2514C": 0.0, "T2533G": 0.0, "T2551C": 0.0, "T2611C": 0.0, "T2689C": 0.0, "T2771C": 0.0, "T2803C": 0.0, "T2917C": 0.0, "T2953C": 0.0, "T3007C": 0.0, "T3022C": null, "T3045C": null, "T3049C": null, "T3059C": null, "T3109C": null, "T3127C": null, "T3129C": null, "T3135A": null, "T3135C": null, "T3136C": null, "T3163C": null, "T3174C": null, "T3178C": null, "T3181C": null, "T3191A": null, "T3195C": null, "T3243C": null, "T3483C": 0.9978799819946289, "T3606A": 0.4797239899635315, "T3612C": 0.5190200209617615, "T3701C": null, "T3738C": null, "T3756C": null, "T3756G": null, "T3807C": null, "T3813C": null, "T3909C": 0.0799650028347969, "T3933C": 0.0, "T4002A": 0.08042000234127045, "T4020C": 0.0, "T4028C": 0.0, "T4056C": 0.0, "T4065C": 0.0, "T4080C": 0.0, "T4090C": 0.0, "T4135G": 0.0, "T4136C": 0.0, "T4168C": 0.0, "T4175A": 0.0, "T4196C": 0.9081360101699829, "T4198G": 0.9994750022888184, "T4212C": 0.0, "T4250C": 0.0, "T4254C": 0.0, "T4274C": 0.5566750168800354, "T4286C": 0.9974750280380249, "T4313C": null, "T4378G": null, "T4454C": 0.9942229986190796, "T4497C": 0.9987940192222595, "T4503C": 0.0, "T4512C": 0.0, "T4546C": 0.0, "T4566C": 0.9802790284156799, "T4568C": 0.0, "T4615C": 0.0, "T4655G": 0.023489000275731087, "T4786A": null, "T4936C": null, "T4962C": null, "T4995C": null, "T4999C": null, "T5043A": null, "T5052A": null, "T5075C": null, "T5076C": null, "T5080C": null, "T5146C": null, "T5233C": null, "T5302C": null, "T5325C": null, "T5328C": null, "T5332C": null, "T5341C": null, "T5368C": null, "T5386C": null, "T5391C": null, "T5468C": null, "T5491C": null, "T5498C": null, "T5531C": 0.0, "T5540C": 0.0, "T5559C": 0.0, "T5561C": 0.0, "T5563C": 0.0, "T5580C": 0.0, "T5590A": 0.0, "T5592C": 0.0, "T5596A": 0.0, "T5636G": 0.0, "T5681A": 0.38808101415634155, "T5682C": 0.9994109869003296, "T5762C": 0.999114990234375, "T5846A": 0.0, "T5870C": null, "T6052A": null, "T6273C": 0.0, "T6329C": 0.9705880284309387, "T6468C": null, "T6668C": null, "T697C": null, "T7007C": null, "T7028C": null, "T7040C": null, "T7055G": null, "T7238C": null, "T7268C": null, "T7337A": null, "T7400C": 0.0, "T7423C": 0.0, "T7436C": 0.0, "T7447C": 0.0, "T7448C": 0.0, "T7461C": 0.0, "T7500C": 0.0, "T7529C": 0.9973369836807251, "T7542C": 0.9994080066680908, "T7555A": 0.0, "T7714C": 0.0, "T8041C": 0.0, "T8044A": 0.0, "T8081C": 0.9989460110664368, "T8108C": 0.9987670183181763, "T8165C": 0.997763991355896, "T8279A": 0.0, "T8285C": 0.998528003692627, "T8327C": 0.9919080138206482, "T8426C": null, "T8483C": null, "T8549C": null, "T8558A": null, "T8561C": null, "T8586C": null, "T8600C": null, "T9080C": null, "T9128C": null, "T9228C": null, "T922C": null, "T9284C": null, "T928C": null, "T9323A": null, "T9713C": null, "T9773C": null, "T9800C": null, "T9938C": null, "T9956C": null}