LOC_0001ZHY.1

Submission details

Submission ID
E2_05_2025_02_06RSV-A
Submitting group
WISE
Date submitted
2025-03-05 15:21:24 UTC
Date released
2025-03-05 15:21:43 UTC

Metadata

Date
2025-02-06
Location
Lugano
Primer protocol
Eawag-2024-RSV subtype A and B
Reference
RSV-A

Frequencies

Nucleotide mutation frequency
{"A10052G": null, "A1009G": 0.9982219934463501, "A10208G": 1.0, "A1021G": 0.999297022819519, "A10343G": 0.0, "A10406G": 0.055045999586582184, "A10421T": 0.06481499969959259, "A10457G": 1.0, "A10466G": 1.0, "A1051C": 0.9988750219345093, "A10649G": null, "A1078G": 0.9989690184593201, "A1080G": 0.0, "A10838T": 0.0, "A10890C": 0.0, "A10907G": 0.9947370290756226, "A10910G": 0.0, "A11045G": 0.0, "A11093G": 0.0, "A11099G": 0.0, "A1110G": 0.046264998614788055, "A11174G": null, "A11237G": null, "A11531G": 0.0, "A11771G": null, "A11867G": null, "A11871G": null, "A11939G": null, "A12098G": 0.0, "A12314G": null, "A12314T": null, "A12473G": null, "A12476T": null, "A12491G": null, "A12569C": null, "A1263G": null, "A12653G": null, "A12668G": null, "A12689G": null, "A12746G": null, "A12756C": null, "A12932G": null, "A13280G": null, "A13313G": null, "A13331G": null, "A13334G": null, "A13337G": null, "A13382G": null, "A13394G": null, "A13451G": null, "A13488G": null, "A13497G": null, "A13514C": null, "A1360G": null, "A1361G": null, "A13699G": null, "A13705G": null, "A13708G": null, "A13763T": null, "A13774G": null, "A13869G": null, "A13895G": null, "A13929G": null, "A1392G": null, "A14025C": null, "A14108G": null, "A14120G": null, "A14123G": null, "A14145C": null, "A1420G": null, "A14391C": 0.0, "A14411G": 1.0, "A14513G": 0.0, "A14519G": 0.0, "A14588G": 0.0, "A14624T": 0.0, "A14627G": 0.9972919821739197, "A14678G": null, "A14722G": null, "A14726G": null, "A14736G": null, "A1476G": null, "A1518G": 0.0, "A1533G": 0.0, "A1650G": 0.0, "A1713G": 0.0, "A2214G": 0.0, "A2277T": 0.0, "A2297G": 0.0, "A2323C": 0.0, "A2392G": 0.6236559748649597, "A2412G": 0.0, "A2544G": 0.0, "A2560G": 0.0, "A2572C": 0.0, "A2584G": 0.0, "A2596C": 0.0, "A2695G": 1.0, "A2698G": 0.0, "A2755G": 0.05263200029730797, "A3034T": 0.0, "A3083T": 0.0, "A3085G": 0.0, "A3092G": 0.0, "A3156G": 0.7102800011634827, "A3169C": 0.0, "A3169T": 1.0, "A3184G": 1.0, "A3185G": 0.0, "A3299G": 0.0, "A3366G": 0.0, "A3378G": 0.0, "A3381G": 0.0, "A3407C": 0.0, "A3426C": 0.0, "A3442C": 0.28975099325180054, "A3453G": 0.0, "A3462T": 0.0, "A3522G": 0.0, "A3564G": 0.9982579946517944, "A3576G": 0.0, "A3642C": 0.0, "A3642T": 0.29236000776290894, "A3663G": null, "A3684G": null, "A3687C": null, "A3751T": null, "A3766G": null, "A3825G": null, "A3840G": null, "A3873T": null, "A3882G": null, "A3915G": 0.0, "A4027G": 0.0, "A4092G": 0.0, "A4098T": 0.0, "A4103G": 0.9056199789047241, "A4153G": 0.0, "A4361C": null, "A4506G": 0.09697599709033966, "A4527G": 0.0, "A4587T": 0.0, "A4687T": 0.9010639786720276, "A4693G": 0.09735699743032455, "A4720G": 0.9014589786529541, "A4732T": 0.0, "A5019G": 0.0, "A5041T": 0.9982619881629944, "A5065G": 0.0, "A5070G": 0.9940440058708191, "A5071G": 0.0, "A5125G": 0.0, "A5183G": 0.0, "A5184G": 0.0, "A5263G": 0.0, "A5266G": 0.0, "A5277G": 0.0, "A5290G": 0.0, "A5313G": 0.0, "A5342G": 0.0, "A5366G": 0.0, "A5376C": 0.0, "A5415G": 0.0, "A5428G": 0.0, "A5435G": 0.9859809875488281, "A5444C": 0.9933040142059326, "A5448T": 0.0, "A5502G": 0.9997490048408508, "A5512G": 0.15319199860095978, "A5535T": 0.0, "A5586T": 0.0, "A5587G": 0.0, "A5599C": 0.0, "A5599G": 0.0, "A5606G": 0.0, "A5609G": 0.5975009799003601, "A5612G": 0.0, "A5612T": 0.0, "A5626T": 0.26451200246810913, "A5662T": 0.0, "A5747C": 0.0, "A5786G": 0.0, "A5801G": 0.3359780013561249, "A6060G": null, "A6101G": 0.9919040203094482, "A6284G": 0.0, "A6431T": null, "A6467G": null, "A6644G": 0.0, "A6716G": 0.0, "A6716T": 0.0, "A7085G": null, "A7103T": null, "A7112G": null, "A7115C": null, "A7169G": null, "A7205G": null, "A7219G": null, "A7223C": null, "A7433C": 0.0, "A7487C": 0.992385983467102, "A7491G": 0.0, "A7560G": 0.6833580136299133, "A7568G": 0.0, "A8101G": 0.0, "A8116G": 0.0, "A8160G": 0.0, "A8173G": 0.0, "A8177G": 0.0, "A8189G": 0.0, "A8269G": 0.018498999997973442, "A8334T": 0.0, "A8345G": null, "A8383G": null, "A8427G": null, "A8471G": 0.0, "A8480G": 0.7272729873657227, "A8487G": 0.0, "A8512T": 0.0, "A8573C": 0.0, "A8573G": 0.0, "A8573T": 0.0, "A8693T": 0.0, "A8758G": 0.0, "A9050G": 0.0, "A9066G": 0.0, "A9066T": 0.0, "A9119G": 1.0, "A940C": 0.999642014503479, "A9626T": 0.0, "A9665G": 0.0, "A9719G": 0.0, "A9842G": 0.0, "A992G": 0.0, "C10015A": null, "C10019T": null, "C1012T": 0.0, "C10301T": 1.0, "C10328T": 0.0, "C10358T": 0.0, "C1046A": 0.0, "C1046T": 0.0, "C1047T": 0.0, "C10530T": 0.0, "C10622T": null, "C10814T": 0.0, "C10862T": 1.0, "C10875T": 0.0, "C10994A": 0.0, "C11000T": 0.0, "C11159T": null, "C11192T": null, "C11216T": null, "C11234T": null, "C11375T": 0.0, "C11477T": 0.0, "C11504T": 0.0, "C11543T": 0.0, "C11657T": 0.0, "C11891T": null, "C11895T": null, "C11921T": null, "C11999A": null, "C12026T": null, "C1203T": 0.0, "C12146T": 0.0, "C12161T": null, "C12549T": null, "C12641T": null, "C12692T": null, "C12707T": null, "C12710T": null, "C12929T": null, "C13517T": null, "C13619T": null, "C13680T": null, "C13748T": null, "C13897T": null, "C14163T": null, "C14356T": 0.0, "C14363T": 0.0, "C14408T": 0.0, "C14414T": 0.0, "C14417T": 1.0, "C14555A": 0.0, "C14582T": 0.0, "C14619T": 0.0, "C14630T": 0.0, "C14714T": null, "C14861T": null, "C1547G": 0.0, "C1677T": 0.9982159733772278, "C1788T": 0.9985780119895935, "C1806T": 1.0, "C1809A": 0.0, "C2181T": 0.0, "C2244T": 0.6305390000343323, "C2378T": 0.0, "C2395A": 0.0, "C2395T": 0.0, "C2410T": 0.0, "C2417T": 0.0, "C2479T": 0.0, "C2509T": 0.0, "C2523T": 0.0, "C2532T": 0.0, "C2542T": 0.0, "C2548A": 0.0, "C2592T": 0.21538500487804413, "C2623T": 0.0, "C2650T": 0.0, "C2767T": 0.0, "C2860T": 0.0, "C2911T": null, "C2965T": 0.0, "C2993T": 0.0, "C3023T": 0.1875, "C3052T": 0.0, "C3061T": 0.0, "C3064A": 0.0, "C3076T": 0.0, "C3087T": 0.0, "C3099T": 0.0, "C3108T": 0.0, "C3112T": 0.0, "C3117T": 0.0, "C3125T": 1.0, "C3148A": 0.2844040095806122, "C3155T": 0.0, "C3168T": 1.0, "C3180A": 0.0, "C3182T": 0.0, "C3303T": 0.0, "C3306T": 0.9949290156364441, "C3342T": 0.0, "C3351T": 0.0, "C3384T": 0.0, "C3390T": 0.7137179970741272, "C3397T": 0.0, "C3420T": 0.0, "C3429A": 0.0, "C3480T": 0.7085130214691162, "C3501T": 0.0, "C3552T": 0.0, "C3624T": 0.9998660087585449, "C3636A": 0.012760000303387642, "C3714T": null, "C3729T": null, "C3816T": null, "C3837T": null, "C3864T": null, "C3912T": 0.0, "C3927T": 0.07822799682617188, "C3984T": 0.05056200176477432, "C4026T": 0.0, "C4037T": 0.9953659772872925, "C4039T": 0.9676520228385925, "C4049T": 0.9213430285453796, "C4079T": 0.05938500165939331, "C4127T": 0.0, "C4149T": 0.0, "C4179T": 0.0, "C4194T": 0.0, "C4208T": 0.03096799924969673, "C4216A": 0.06380599737167358, "C4221T": 0.8971750140190125, "C4242T": 0.0, "C4249A": 0.0, "C4307T": null, "C4316T": null, "C4323T": null, "C4373T": null, "C4397T": null, "C4400T": null, "C4427T": 0.8950620293617249, "C4434T": 0.0, "C4440A": 1.0, "C4486T": 0.0, "C4523T": 0.0, "C4558T": 0.0, "C4559T": 0.9011499881744385, "C4570A": 0.0, "C4571T": 0.09725800156593323, "C4624T": 0.0, "C4651G": 0.010002000257372856, "C4678T": 0.0, "C4681A": 0.0, "C4681T": 0.0, "C4705T": 0.09803900122642517, "C4850A": null, "C4863T": null, "C4919T": null, "C4952T": null, "C4984T": null, "C4989T": null, "C5004T": 0.0, "C5010T": 0.0, "C5026T": 0.0, "C5058T": 0.0, "C5067T": 0.9985799789428711, "C5078T": 0.0, "C5079T": 0.0, "C5089A": 0.0, "C5203A": 0.01602800004184246, "C5203T": 0.9832209944725037, "C5268A": 0.0, "C5272T": 0.0, "C5296T": 0.0, "C5301T": 0.0, "C5310T": 0.0, "C5316T": 0.0, "C5327T": 0.0, "C5335T": 0.0, "C5352T": 0.0, "C5374A": 0.9964290261268616, "C5380T": 0.0, "C5393A": 0.060823000967502594, "C5404G": 0.0, "C5425A": 0.0, "C5425T": 0.06557399779558182, "C5461A": 0.0, "C5477T": 0.0, "C5478T": 0.0, "C5500T": 0.0, "C5539T": 0.0, "C5544T": 0.0, "C5578T": 0.0, "C5589T": 0.0, "C5605T": 0.0, "C5607A": 0.40129798650741577, "C5607T": 0.5974509716033936, "C5650T": 0.3988269865512848, "C5655T": 0.0, "C5661A": 0.4003709852695465, "C5677T": 0.0, "C5680T": 0.0, "C5711T": 0.0, "C5714T": 0.0, "C5731T": 0.424237996339798, "C5738T": 0.0, "C5739T": 0.20596499741077423, "C5750T": 0.7760459780693054, "C5780T": 0.2629140019416809, "C5915T": null, "C6005A": null, "C6030T": null, "C6059T": null, "C6140T": 0.0, "C6263T": 0.0, "C6521A": 0.0, "C6653T": 0.0, "C6657T": 0.0, "C6686T": 0.0, "C7249T": null, "C7367T": 0.0, "C7386T": 0.0, "C7403T": 0.9995160102844238, "C7434T": 0.0, "C7458T": 0.34009701013565063, "C7468A": 0.3389669954776764, "C7468T": 0.0, "C7478T": 0.0, "C7514T": 0.0, "C7566A": 0.0, "C7606A": 0.0, "C7610A": 0.0, "C7666T": 0.0, "C7987T": 0.9685350060462952, "C8050T": 0.0, "C8077T": 0.0, "C8122T": 0.0, "C8143T": 0.0, "C8194T": 0.0, "C8309T": 0.9834709763526917, "C8321T": 0.0, "C8330T": 0.0, "C8418A": null, "C8468T": 0.0, "C8470T": 0.0, "C8475T": 0.0, "C8481T": 0.0, "C8486T": 0.0, "C8494A": 0.0, "C8618T": 0.7355369925498962, "C8738T": 0.0, "C9015T": 0.0, "C9043T": 0.0, "C904T": 0.0, "C952T": 0.0, "C9632T": 0.0, "C9716T": 0.0, "C983A": 0.0, "C9875T": 0.0, "C990A": 0.0, "C9962T": 0.0, "C9989T": null, "G1000A": 0.0, "G10151A": null, "G1034A": 0.0, "G1049A": 0.0, "G1050A": 0.9986870288848877, "G10776T": 0.0, "G1077A": 0.0, "G10793A": 0.0, "G10826A": 0.0, "G11120A": 1.0, "G11123A": 1.0, "G1131A": 0.9982370138168335, "G11666A": 0.0, "G11768A": null, "G11780A": null, "G11786A": null, "G11894A": null, "G12206A": null, "G12263A": null, "G12296A": null, "G12386A": null, "G1248A": null, "G12542A": null, "G13274A": null, "G1368A": null, "G13691A": null, "G13692A": null, "G13723A": null, "G13729A": null, "G13734A": null, "G1383A": null, "G13850A": null, "G14036A": null, "G14126A": null, "G14348A": 0.0, "G14358A": 0.0, "G14534A": 0.0, "G14577A": 0.0, "G14873A": null, "G14881A": null, "G1584T": 0.0, "G1662A": 0.0, "G1848A": null, "G2196A": 0.0, "G2238A": 0.0, "G2298A": 0.0, "G2539A": 0.0, "G2593A": 0.0, "G2782A": null, "G2806A": 0.0, "G2980A": 0.0, "G3082T": 0.0, "G3130A": 0.0, "G3146A": 0.0, "G3183A": 0.0, "G3354A": 0.0, "G3402A": 0.0, "G3402T": 0.0, "G3531A": 0.7077170014381409, "G3531C": 0.0, "G3616A": 0.0, "G3616C": 0.0, "G4019A": 0.0, "G4081A": 0.0, "G4083A": 0.0, "G4111A": 0.9656760096549988, "G4145A": 0.0, "G4244A": 1.0, "G4248A": 0.030629999935626984, "G4248T": 0.06409499794244766, "G4252A": 0.0, "G4474A": 0.9023240208625793, "G4488A": 0.0, "G4496A": 0.09625300019979477, "G4595T": 0.0, "G4621A": 0.0, "G4950A": null, "G4963A": null, "G4967A": null, "G4968A": null, "G5013T": 0.0, "G5020A": 0.999409019947052, "G5082T": 0.0, "G5212A": 0.0, "G5254A": 0.0, "G5322A": 0.8767719864845276, "G5322C": 0.0, "G5322T": 0.10008300095796585, "G5338A": 0.0, "G5345A": 0.0, "G5379C": 0.0, "G5379T": 1.0, "G5412A": 0.0, "G5466A": 0.0, "G5507A": 0.0012529999949038029, "G5534A": 0.0, "G5537A": 0.0, "G5547A": 0.0, "G5558A": 0.0, "G5575A": 0.0, "G5631A": 0.39989200234413147, "G5633A": 0.334199994802475, "G5647A": 0.9990530014038086, "G5648A": 0.0, "G5702T": 0.0, "G5763A": 0.0, "G5981A": null, "G6003A": null, "G6075A": 0.0, "G6119A": 0.0080960001796484, "G6182A": 0.007788999937474728, "G6269A": 0.006893000099807978, "G6302A": 0.9910370111465454, "G6523A": 0.0, "G7037A": null, "G7046A": null, "G7199A": null, "G7455A": 0.33961400389671326, "G7492A": 0.0, "G7592A": 0.0, "G7624A": 0.0, "G7698A": 0.0, "G7984A": 0.0, "G8020A": 0.0, "G8056A": 0.0, "G8059A": 0.0, "G8191A": 0.0, "G8329A": 1.0, "G8459A": 0.0, "G8750A": 0.2622950077056885, "G9026A": 0.0, "G9068A": 0.0, "G9178A": 0.0, "G9250A": 0.9935899972915649, "G9298A": 0.9870970249176025, "G9341A": 0.0, "G9758A": 0.9935060143470764, "G9893A": 0.9957450032234192, "T10016C": null, "T10034C": null, "T1004C": 0.999110996723175, "T10076C": null, "T10193C": 0.0, "T1019C": 0.0, "T1028C": 0.9991539716720581, "T10323C": 0.9785709977149963, "T1032C": 0.0, "T10346C": 0.0, "T10352C": 0.07865200191736221, "T1035A": 0.0, "T1048C": 0.0, "T10505C": 0.0, "T10565C": null, "T10607C": null, "T10610C": null, "T10802C": 0.0, "T10850C": 0.0, "T10859C": 0.0, "T10955C": 0.9941400289535522, "T10958C": 0.0, "T11034A": 0.9989290237426758, "T11105G": 0.0, "T11135C": 0.0, "T11219C": null, "T11315C": 0.0, "T11354C": 0.0, "T11447C": 0.0, "T11489A": 0.0, "T11579C": 0.0, "T11615A": 0.9904760122299194, "T11621C": 0.0, "T12149A": 0.0, "T12185C": null, "T12239C": null, "T1224C": 0.0, "T12356C": null, "T1242C": 0.0, "T1245C": null, "T12494C": null, "T1254C": null, "T12572C": null, "T12611C": null, "T12635C": null, "T12737C": null, "T12740C": null, "T12782C": null, "T1281C": null, "T12844A": null, "T1284C": null, "T12893C": null, "T13307C": null, "T13463A": null, "T1359C": null, "T13601A": null, "T13700C": null, "T13730C": null, "T13799A": null, "T1380C": null, "T13862C": null, "T13883A": null, "T13883C": null, "T13913C": null, "T13922C": null, "T13958G": null, "T13973C": null, "T13988C": null, "T14039C": null, "T14117C": null, "T14138A": null, "T1413A": null, "T1422C": null, "T14359A": 0.0, "T14369C": 0.0, "T14396C": 0.0, "T1443C": null, "T14459C": 0.0, "T14517C": 1.0, "T14522C": 0.9884510040283203, "T14529C": 0.0, "T14558C": 0.0, "T14567C": 0.998652994632721, "T14576C": 0.0, "T14660C": 0.0, "T14795C": null, "T14924C": null, "T1644C": 0.0, "T1653C": 0.0, "T1668C": 0.0, "T1671C": 0.0, "T1707C": 0.0, "T1708C": 0.0, "T1756C": 0.0, "T1785C": 0.0, "T1791C": 0.0, "T1821C": 0.0, "T1935C": null, "T1980C": null, "T2127C": 0.0, "T2139C": 0.0, "T2145C": 0.0, "T2146C": 0.0, "T2154C": 0.0, "T2165C": 1.0, "T2212C": 0.0, "T2218C": 0.0, "T2268C": 0.0, "T2316A": 0.0, "T2416C": 0.0, "T2431C": 0.0, "T2434C": 0.0, "T2458C": 0.0, "T2481C": 0.0, "T2482C": 0.0, "T2495C": 0.0, "T2502C": 0.0, "T2503C": 0.0, "T2514C": 0.0, "T2533G": 0.0, "T2551C": 0.0, "T2611C": 0.0, "T2689C": 0.0, "T2771C": 0.0, "T2803C": 0.0, "T2917C": null, "T2953C": 0.0, "T3007C": 0.0, "T3022C": 0.0, "T3045C": 0.0, "T3049C": 0.0, "T3059C": 0.0, "T3109C": 1.0, "T3127C": 0.0, "T3129C": 0.0, "T3135A": 0.0, "T3135C": 0.0, "T3136C": 0.0, "T3163C": 1.0, "T3174C": 0.0, "T3178C": 1.0, "T3181C": 1.0, "T3191A": 0.0, "T3195C": 0.0, "T3243C": 0.3442620038986206, "T3483C": 0.9985610246658325, "T3606A": 0.706387996673584, "T3612C": 0.0, "T3701C": null, "T3738C": null, "T3756C": null, "T3756G": null, "T3807C": null, "T3813C": null, "T3909C": 0.08018899708986282, "T3933C": 0.0, "T4002A": 0.05121000111103058, "T4020C": 0.9459959864616394, "T4028C": 0.02881000004708767, "T4056C": 0.0, "T4065C": 0.027675999328494072, "T4080C": 0.031106000766158104, "T4090C": 0.03107300028204918, "T4135G": 0.0, "T4136C": 0.0, "T4168C": 0.03203999996185303, "T4175A": 0.0, "T4196C": 0.9019169807434082, "T4198G": 1.0, "T4212C": 0.0, "T4250C": 0.0, "T4254C": 0.0, "T4274C": 0.6465970277786255, "T4286C": 0.9973679780960083, "T4313C": null, "T4378G": null, "T4454C": 0.9011510014533997, "T4497C": 0.9998430013656616, "T4503C": 0.0, "T4512C": 0.0, "T4546C": 0.0, "T4566C": 0.8955180048942566, "T4568C": 0.0, "T4615C": 0.0, "T4655G": 0.010800999589264393, "T4786A": null, "T4936C": null, "T4962C": null, "T4995C": 0.0, "T4999C": 0.0, "T5043A": 0.0, "T5052A": 1.0, "T5075C": 0.0, "T5076C": 0.0, "T5080C": 0.0, "T5146C": 0.0, "T5233C": 0.0, "T5302C": 0.0, "T5325C": 0.0, "T5328C": 0.0, "T5332C": 0.0, "T5341C": 0.0, "T5368C": 0.06060599908232689, "T5386C": 0.0, "T5391C": 0.0, "T5468C": 0.0, "T5491C": 0.9983260035514832, "T5498C": 0.0, "T5531C": 0.0, "T5540C": 0.0, "T5559C": 0.0, "T5561C": 0.0, "T5563C": 0.0, "T5580C": 0.0, "T5590A": 0.0, "T5592C": 0.0, "T5596A": 0.0, "T5636G": 0.0, "T5681A": 0.33203399181365967, "T5682C": 0.9996579885482788, "T5762C": 0.7357000112533569, "T5846A": 0.0, "T5870C": null, "T6052A": null, "T6273C": 0.0, "T6329C": 0.9991030097007751, "T6468C": null, "T6668C": 1.0, "T697C": null, "T7007C": null, "T7028C": null, "T7040C": null, "T7055G": null, "T7238C": null, "T7268C": null, "T7337A": null, "T7400C": 0.0, "T7423C": 0.34219399094581604, "T7436C": 0.3415459990501404, "T7447C": 0.0, "T7448C": 0.0, "T7461C": 0.3391300141811371, "T7500C": 0.0, "T7529C": 0.9985499978065491, "T7542C": 0.9990329742431641, "T7555A": 0.0, "T7714C": 0.36280199885368347, "T8041C": 0.0, "T8044A": 0.0, "T8081C": 1.0, "T8108C": 0.0, "T8165C": 0.998458981513977, "T8279A": 0.0, "T8285C": 0.0, "T8327C": 0.0, "T8426C": null, "T8483C": 0.0, "T8549C": 0.0, "T8558A": 0.0, "T8561C": 0.0, "T8586C": 0.0, "T8600C": 0.0, "T9080C": 0.0, "T9128C": 0.0, "T9228C": 0.0, "T922C": 0.9991030097007751, "T9284C": 0.0, "T928C": 0.0, "T9323A": 1.0, "T9713C": 0.0, "T9773C": 0.9956899881362915, "T9800C": 0.9978489875793457, "T9938C": 0.0, "T9956C": 0.0}