LOC_0001VDB.3

Submission details

Submission ID
B3_17_2025_01_24RSV-A
Submitting group
WISE
Date submitted
2025-03-20 14:59:35 UTC
Date released
2025-03-20 15:02:28 UTC

Frequencies

Amino acid mutation frequency
{"N:K84E": 0.0, "N:K84R": 0.0, "N:I104V": 0.0, "N:A146G": 0.0, "N:M158I": 0.04852600023150444, "N:Y216H": 0.0, "N:V352A": 1.0, "P:E2D": 0.0, "P:K32R": 0.0, "P:P34S": 0.0, "P:L55P": 0.99270099401474, "P:S60P": 0.0, "P:I62T": 0.0, "P:I66T": 0.0, "P:T69I": 0.0, "P:T72I": 0.0, "P:K76R": 0.0, "P:T92M": 0.652275025844574, "P:E239D": 0.0, "M:K25R": 0.25510600209236145, "M:Q61P": null, "M:M73L": null, "M:D131N": 0.0, "M:D131H": 0.0, "M:I159T": 0.0, "M:T176S": 0.0, "M:T181A": 0.0, "SH:I38S": 0.6937369704246521, "SH:V49A": 0.30110499262809753, "G:S2A": null, "G:A57T": 0.0, "G:H67N": 0.0, "G:P71L": 0.9997469782829285, "G:H90Y": 0.9911389946937561, "G:S100N": 0.0, "G:L101F": 0.9995009899139404, "G:L101P": 0.0, "G:L104P": 0.0, "G:G106R": 0.0, "G:G106E": 0.0, "G:T113I": 0.06237199902534485, "G:L115P": 0.0, "G:A116V": 0.0, "G:T118I": 0.0, "G:P120L": 0.0, "G:S121I": 0.0, "G:E123G": 0.0, "G:T130I": 0.0, "G:V131D": 0.0599370002746582, "G:I134K": 1.0, "G:T136I": 0.0, "G:T139I": 0.0, "G:Q140R": 0.0, "G:L142S": 0.9355350136756897, "G:P143S": 0.0, "G:P143L": 0.0, "G:S144I": null, "G:N178D": 0.02648100070655346, "G:N178S": 0.026475999504327774, "G:G195R": 0.0, "G:P206Q": 0.0, "G:K209R": 0.0, "G:P217S": 0.0, "G:P217L": 0.0, "G:T220I": 0.0, "G:K221R": 0.0, "G:P222L": 0.0, "G:G224V": 0.0, "G:G224A": 0.0, "G:G224E": 0.9939259886741638, "G:V225A": 0.9721760153770447, "G:L226F": 0.0, "G:L226P": 0.0, "G:T231A": 0.0, "G:G232R": 0.0, "G:P234L": 0.0, "G:T239A": 0.0, "G:N242T": 0.0, "G:S243T": 0.0, "G:S243I": 0.9995099902153015, "G:L247P": 0.0, "G:L248I": 0.0, "G:N251K": 0.0, "G:G254E": 0.0, "G:N255S": 0.0, "G:H258Q": 0.026947999373078346, "G:K262E": 0.9917920231819153, "G:I265L": 0.9986310005187988, "G:H266L": 0.02698500081896782, "G:G272V": 0.0, "G:G272D": 0.0, "G:Y273H": 0.0, "G:P276S": null, "G:P276L": null, "G:S283P": null, "G:D284G": null, "G:E286K": null, "G:S294P": null, "G:S294F": null, "G:E295K": null, "G:E295V": null, "G:G296S": null, "G:Y297H": null, "G:P298L": null, "G:S299N": null, "G:V303I": null, "G:V303A": null, "G:Y304H": null, "G:E308K": null, "G:L310P": null, "G:Q312L": null, "G:S313F": null, "G:L314P": null, "G:T319A": null, "G:T319K": null, "G:T319I": null, "G:T320A": null, "G:K321E": null, "F:E2D": null, "F:L3S": null, "F:T12I": null, "F:L15F": null, "F:A23T": 0.0, "F:A103T": 0.0, "F:P112S": 0.0, "F:L119H": 0.0, "F:T122A": 0.0, "F:V127I": 0.0, "F:S276N": null, "F:T326S": null, "F:K508R": 0.0, "F:A518V": 0.0, "M2-1:R20K": 0.0, "M2-1:N174S": 0.0, "M2-1:S176P": 0.9990339875221252, "M2-1:T180A": 0.0, "M2-1:S182G": 0.0, "M2-1:T184A": 0.0, "M2-2:Y24C": 0.9995719790458679, "M2-2:S44N": 0.999783992767334, "M2-2:I46L": 0.0, "M2-2:D62G": null, "M2-2:L74I": null, "M2-2:G75S": null, "M2-2:T77A": null, "L:K76R": 1.0, "L:P171L": 0.9990620017051697, "L:T179S": 0.0, "L:T179A": 0.9990630149841309, "L:S216N": 0.0, "L:S240N": 0.0, "L:R256K": 0.997672975063324, "L:T495N": null, "L:Y598H": 0.9742540121078491, "L:A749S": 0.0, "L:I787L": 0.0, "L:L835M": 0.9996640086174011, "L:I1114V": null, "L:M1225I": 0.0, "L:I1314M": 0.0, "L:L1340F": 0.0, "L:L1438Q": null, "L:D1644E": 0.05459799990057945, "L:I1653V": 0.9479770064353943, "L:I1656V": 0.0, "L:K1661N": 0.9647060036659241, "L:H1690Q": 0.02602200023829937, "L:N1719S": 0.0, "L:V1721I": 0.0, "L:N1723S": 1.0, "L:E1725G": 1.0, "L:K1726R": 1.0, "L:G1731D": 1.0, "L:C1733Y": 0.0, "L:G1735S": 0.0, "L:G1735D": 0.0, "L:N1748S": 0.0, "L:I1780V": 0.5122860074043274, "L:S1789F": 0.48760101199150085, "L:I1800V": 0.0, "L:I1832L": 0.0, "L:T1942I": 0.0, "L:V1943I": 0.9985899925231934, "L:V1943D": 0.0, "L:K1954Q": 0.0, "L:V2016M": 0.0, "L:K2064R": null, "L:T2069A": null, "L:R2117K": null, "M:M43I": null}
Nucleotide mutation frequency
{"A1360G": 0.0, "A1361G": 0.0, "A1420G": 0.0, "C1547G": 0.0, "G1584T": 0.04852600023150444, "T1756C": 0.0, "T2165C": 1.0, "A2323C": 0.0, "A2412G": 0.0, "C2417T": 0.0, "T2481C": 0.99270099401474, "T2495C": 0.0, "T2502C": 0.0, "T2514C": 0.0, "C2523T": 0.0, "C2532T": 0.0, "A2544G": 0.0, "C2592T": 0.652275025844574, "A3034T": 0.0, "A3299G": 0.25510600209236145, "G3354A": null, "A3407C": null, "A3442C": null, "G3616A": 0.0, "G3616C": 0.0, "T3701C": 0.0, "A3751T": 0.0, "A3766G": 0.0, "T4378G": 0.6937369704246521, "T4411C": 0.30110499262809753, "T4655G": null, "G4820A": 0.0, "C4850A": 0.0, "C4863T": 0.9997469782829285, "C4919T": 0.9911389946937561, "G4950A": 0.0, "C4952T": 0.9995009899139404, "T4953C": 0.0, "T4962C": 0.0, "G4967A": 0.0, "G4968A": 0.0, "C4989T": 0.06237199902534485, "T4995C": 0.0, "C4998T": 0.0, "C5004T": 0.0, "C5010T": 0.0, "G5013T": 0.0, "A5019G": 0.0, "C5040T": 0.0, "T5043A": 0.0599370002746582, "T5052A": 1.0, "C5058T": 0.0, "C5067T": 0.0, "A5070G": 0.0, "T5076C": 0.9355350136756897, "C5078T": 0.0, "C5079T": 0.0, "G5082T": null, "A5183G": 0.02648100070655346, "A5184G": 0.026475999504327774, "G5234A": 0.0, "C5268A": 0.0, "A5277G": 0.0, "C5300T": 0.0, "C5301T": 0.0, "C5310T": 0.0, "A5313G": 0.0, "C5316T": 0.0, "G5322T": 0.0, "G5322C": 0.0, "G5322A": 0.9939259886741638, "T5325C": 0.9721760153770447, "C5327T": 0.0, "T5328C": 0.0, "A5342G": 0.0, "G5345A": 0.0, "C5352T": 0.0, "A5366G": 0.0, "A5376C": 0.0, "G5379C": 0.0, "G5379T": 0.9995099902153015, "T5391C": 0.0, "C5393A": 0.0, "C5404G": 0.0, "G5412A": 0.0, "A5415G": 0.0, "C5425A": 0.026947999373078346, "A5435G": 0.9917920231819153, "A5444C": 0.9986310005187988, "A5448T": 0.02698500081896782, "G5466T": 0.0, "G5466A": 0.0, "T5468C": 0.0, "C5477T": null, "C5478T": null, "T5498C": null, "A5502G": null, "G5507A": null, "T5531C": null, "C5532T": null, "G5534A": null, "A5535T": null, "G5537A": null, "T5540C": null, "C5544T": null, "G5547A": null, "G5558A": null, "T5559C": null, "T5561C": null, "G5573A": null, "T5580C": null, "A5586T": null, "C5589T": null, "T5592C": null, "A5606G": null, "C5607A": null, "C5607T": null, "A5609G": null, "A5612G": null, "G5702T": null, "T5704C": null, "C5731T": null, "C5739T": null, "G5763A": 0.0, "G6003A": 0.0, "C6030T": 0.0, "T6052A": 0.0, "A6060G": 0.0, "G6075A": 0.0, "G6523A": null, "A6672T": null, "A7219G": 0.0, "C7249T": 0.0, "G7698A": 0.0, "A8160G": 0.0, "T8165C": 0.9990339875221252, "A8177G": 0.0, "A8183G": 0.0, "A8189G": 0.0, "A8269G": 0.9995719790458679, "G8329A": 0.999783992767334, "A8334T": 0.0, "A8383G": null, "C8418A": null, "G8421A": null, "A8427G": null, "A8758G": 1.0, "C9043T": 0.9990620017051697, "A9066T": 0.0, "A9066G": 0.9990630149841309, "G9178A": 0.0, "G9250A": 0.0, "G9298A": 0.997672975063324, "C10015A": null, "T10323C": 0.9742540121078491, "G10776T": 0.0, "A10890C": 0.0, "T11034A": 0.9996640086174011, "A11871G": null, "G12206A": 0.0, "A12473G": 0.0, "C12549T": 0.0, "T12844A": null, "T13463A": 0.05459799990057945, "A13488G": 0.9479770064353943, "A13497G": 0.0, "A13514C": 0.9647060036659241, "T13601A": 0.02602200023829937, "A13687G": 0.0, "G13692A": 0.0, "A13699G": 1.0, "A13705G": 1.0, "A13708G": 1.0, "G13723A": 1.0, "G13729A": 0.0, "G13734A": 0.0, "G13735A": 0.0, "A13774G": 0.0, "A13869G": 0.5122860074043274, "C13897T": 0.48760101199150085, "A13929G": 0.0, "A14025C": 0.0, "C14356T": 0.0, "G14358A": 0.9985899925231934, "T14359A": 0.0, "A14391C": 0.0, "G14577A": 0.0, "A14722G": null, "A14736G": null, "G14881A": null}

Metadata

Date
2025-01-24
Location
Chur
Primer protocol
Eawag-2024-RSV subtype A and B
Reference
RSV-A