LOC_0001VCD.5

Submission details

Submission ID
B2_15_2025_01_20RSV-A
Submitting group
Date submitted
2025-03-31 18:37:53 UTC
Date released
2025-03-31 18:38:15 UTC

Frequencies

Amino acid mutation frequency
{"NS2:Y84N": null, "N:K84E": null, "N:K84R": null, "N:I104V": null, "N:A146G": 0.0, "N:M158I": 0.0, "N:Y216H": 0.0, "N:V352A": 1.0, "P:E2D": 0.0, "P:K32R": 0.24202099442481995, "P:P34S": 0.0, "P:L55P": 1.0, "P:S60P": 0.0, "P:I62T": 0.0, "P:I66T": 0.0, "P:T69I": 0.0, "P:T72I": 0.0, "P:K76R": 0.0, "P:T92M": 0.0, "P:E239D": 0.0, "M:K25R": 0.0, "M:Q61P": 0.0, "M:M73L": 0.0, "M:D131H": 0.0,...
Nucleotide mutation frequency
{"T848A": null, "A1360G": null, "A1361G": null, "A1420G": null, "C1547G": 0.0, "G1584T": 0.0, "T1756C": 0.0, "T2165C": 1.0, "A2323C": 0.0, "A2412G": 0.24202099442481995, "C2417T": 0.0, "T2481C": 1.0, "T2495C": 0.0, "T2502C": 0.0, "T2514C": 0.0, "C2523T": 0.0, "C2532T": 0.0, "A2544G": 0.0, "C2592T": 0.0, "A3034T": 0.0, "A3299G": 0.0, "G3354A": 0.6951670050621033, "A3407C": 0.0, "A3442C": 0.0, "G3616C": 0.0, "G3616A": 0.0, "T3701C": 0.0, "A3751T": 0.0, "A3766G": 0.0, "T4378G": null, "G4399A": null, "T4411C": null, "T4655G": null, "A4660C": null, "G4820A": 0.0, "C4850A": 0.0, "C4863T": 1.0, "C4919T": 0.9955459833145142, "G4950A": 0.0, "C4952T": 1.0, "T4953C": 0.0, "T4962C": 0.0, "G4967A": 0.0, "G4968A": 0.0, "C4989T": 0.031817998737096786, "T4995C": 0.0, "C4998T": 0.0, "C5004T": 0.0, "C5010T": 0.0, "G5013T": 0.0, "A5019G": 0.0, "C5040T": 0.0, "T5043A": 0.016194000840187073, "T5052A": 0.9939020276069641, "C5058T": 0.0, "C5067T": 0.0, "A5070G": 0.0, "T5076C": 0.9837070107460022, "C5078T": 0.0, "C5079T": 0.0, "G5082T": 0.6373239755630493, "A5183G": 0.01512600015848875, "A5184G": 0.01512600015848875, "G5234A": 0.0, "C5268A": 0.0, "A5277G": 0.0, "C5300T": 0.0, "C5301T": 0.0, "C5310T": 0.0, "A5313G": 0.0, "C5316T": 0.0, "G5322T": 0.5899050235748291, "G5322C": 0.0, "G5322A": 0.4069400131702423, "T5325C": 0.0, "C5327T": 0.5923569798469543, "T5328C": 0.0, "A5342G": 0.0, "G5345A": 0.0, "C5352T": null, "A5366G": null, "A5376C": null, "G5379C": null, "G5379T": null, "T5391C": null, "C5393A": null, "C5404G": null, "G5412A": null, "A5415G": null, "C5425A": null, "A5435G": null, "A5444C": null, "A5444T": null, "A5448T": null, "G5466A": null, "G5466T": null, "T5468C": null, "C5477T": null, "C5478T": null, "T5498C": null, "A5502G": null, "G5507A": null, "T5531C": 0.0, "C5532T": 0.0, "G5534A": 0.0, "A5535T": 0.0, "G5537A": 0.0, "T5540C": 0.8151040077209473, "C5544T": 0.0, "G5547A": 0.0, "G5558A": 0.0, "T5559C": 0.0, "T5561C": 1.0, "G5573A": 0.0, "T5580C": 0.8041499853134155, "A5586T": 0.0, "C5589T": 0.8132299780845642, "T5592C": 0.0, "A5606G": 0.0, "C5607T": 0.18704600632190704, "C5607A": 0.0, "A5609G": 1.0, "A5612G": 0.8112210035324097, "G5702T": 0.0, "T5704C": 0.0, "C5731T": 0.0, "C5739T": 0.0, "G5763A": 0.0, "G6003A": null, "C6030T": null, "T6052A": null, "A6060G": null, "G6075A": null, "G6523A": 0.0, "A6672T": 0.0, "T6717G": 0.0, "A7219G": 0.0, "C7249T": 0.0, "G7698A": 0.0, "A8160G": 0.46535998582839966, "T8165C": 0.9978979825973511, "A8177G": 0.4621320068836212, "G8180A": 0.0, "A8183G": 0.46456098556518555, "A8189G": 0.0, "A8269G": 1.0, "G8329A": 0.0, "A8334T": 0.0, "A8383G": null, "C8384A": null, "C8418A": null, "G8421A": null, "A8427G": null, "A8758G": null, "C9043T": 0.0, "A9066G": 0.0, "A9066T": 0.9919350147247314, "G9178A": 0.0, "G9250A": 0.0, "A9264G": 0.0, "G9298A": 0.0, "C10015A": null, "T10323C": 0.96875, "G10776T": 0.0, "A10890C": 0.0, "T11034A": 0.0, "A11871G": null, "G12206A": null, "A12473G": 0.0, "C12549T": 0.0, "T12844A": null, "T13463A": null, "A13488G": null, "A13497G": null, "A13514C": null, "T13601A": null, "A13687G": null, "G13692A": null, "A13699G": null, "A13705G": null, "A13708G": null, "G13723A": null, "G13729A": null, "G13734A": null, "G13735A": null, "A13774G": null, "A13869G": 0.0, "C13897T": 0.9469029903411865, "A13929G": 0.0, "A14025C": 0.0, "G14331A": 0.0, "C14356T": 0.0, "G14358A": 0.0, "T14359A": 0.0, "A14391C": 0.0, "C14568T": 0.0, "G14577A": 0.0, "A14722G": null, "A14736G": 0.0, "G14881A": null}

Metadata

Date
2025-01-20
Location
Basel
Primer protocol
Eawag-2024-RSV subtype A and B
Reference
RSV-A