LOC_0001N0A.5

Submission details

Submission ID
D3_15_2025_01_12RSV-A
Submitting group
WISE
Date submitted
2025-03-31 17:22:01 UTC
Date released
2025-03-31 17:22:43 UTC

Frequencies

Amino acid mutation frequency
{"NS2:Y84N": null, "N:K84E": 0.0, "N:K84R": 0.9907690286636353, "N:I104V": 0.0, "N:A146G": 0.0, "N:M158I": null, "N:Y216H": null, "N:V352A": null, "P:E2D": null, "P:K32R": null, "P:P34S": null, "P:L55P": 0.9750000238418579, "P:S60P": 0.0, "P:I62T": 0.0, "P:I66T": 0.0, "P:T69I": 0.0, "P:T72I": 0.0, "P:K76R": 0.0, "P:T92M": 0.0, "P:E239D": 0.0, "M:K25R": 0.0, "M:Q61P": 0.0, "M:M73L": 0.0, "M:D131H": 0.0, "M:D131N": 0.0, "M:I159T": 0.0, "M:T176S": 0.0, "M:T181A": 0.010964999906718731, "SH:I38S": null, "SH:C45Y": null, "SH:V49A": null, "G:S2A": null, "G:K3N": null, "G:A57T": null, "G:H67N": null, "G:P71L": null, "G:H90Y": null, "G:S100N": null, "G:L101F": null, "G:L101P": null, "G:L104P": null, "G:G106R": null, "G:G106E": null, "G:T113I": null, "G:L115P": 0.0, "G:A116V": 0.0, "G:T118I": 0.0, "G:P120L": 0.9988620281219482, "G:S121I": 0.9996209740638733, "G:E123G": 0.0, "G:T130I": 0.0, "G:V131D": 0.0, "G:I134K": 0.9992499947547913, "G:T136I": 0.0, "G:T139I": 0.0, "G:Q140R": 0.0, "G:L142S": 0.9536100029945374, "G:P143S": 0.9996259808540344, "G:P143L": 0.0, "G:S144I": 0.0, "G:N178D": 0.0, "G:N178S": 0.0, "G:G195R": 0.0, "G:P206Q": 0.0, "G:K209R": 0.0, "G:P217S": 0.0, "G:P217L": 0.0, "G:T220I": 0.0, "G:K221R": 0.0, "G:P222L": 0.0, "G:G224V": 0.0, "G:G224A": 0.29877200722694397, "G:G224E": 0.6540539860725403, "G:V225A": 0.0, "G:L226F": 0.0, "G:L226P": 0.0, "G:T231A": 0.0, "G:G232R": 0.0, "G:P234L": 0.0, "G:T239A": 0.0, "G:N242T": 0.0, "G:S243T": 0.9963740110397339, "G:S243I": 0.0, "G:L247P": 0.0, "G:L248I": 0.0, "G:N251K": 0.0, "G:G254E": 0.0, "G:N255S": 0.0, "G:H258Q": 0.0, "G:K262E": 0.9740099906921387, "G:I265L": 0.9863010048866272, "G:I265F": 0.0, "G:H266L": 0.0, "G:G272D": 0.0, "G:G272V": 0.0, "G:Y273H": 0.0, "G:P276S": null, "G:P276L": null, "G:S283P": null, "G:D284G": null, "G:E286K": null, "G:S294P": 0.0, "G:S294F": 0.0, "G:E295K": 0.0, "G:E295V": 0.0, "G:G296S": 1.0, "G:Y297H": 0.0, "G:P298L": 0.0, "G:S299N": 0.9997559785842896, "G:V303I": 0.0, "G:V303A": 0.0, "G:Y304H": 0.0, "G:E308K": 0.0, "G:L310P": 0.0, "G:Q312L": 0.0, "G:S313F": 0.0, "G:L314P": 0.0, "G:T319A": 0.9987729787826538, "G:T319I": 0.0, "G:T319K": 0.0, "G:T320A": 0.9970960021018982, "G:K321E": 0.0, "F:E2D": 0.0, "F:L3S": 0.0, "F:T12I": 0.0, "F:L15F": 0.0, "F:A23T": 0.0, "F:A103T": null, "F:P112S": null, "F:L119H": null, "F:T122A": null, "F:V127I": null, "F:S276N": 0.0, "F:T326S": 0.0, "F:W341G": 0.0, "F:K508R": 0.03508799895644188, "F:A518V": 0.0, "M2-1:R20K": 0.0, "M2-1:N174S": 0.22791500389575958, "M2-1:S176P": 0.9938409924507141, "M2-1:T180A": 0.2256460040807724, "M2-1:V181I": 0.20893999934196472, "M2-1:S182G": 0.0, "M2-1:T184A": 0.0, "M2-2:Y24C": 0.7931510210037231, "M2-2:S44N": 0.9989680051803589, "M2-2:I46L": 0.0, "M2-2:D62G": null, "M2-2:D62E": null, "M2-2:L74I": null, "M2-2:G75S": null, "M2-2:T77A": null, "L:K76R": 0.0, "L:P171L": null, "L:T179A": null, "L:T179S": null, "L:S216N": null, "L:S240N": null, "L:I245V": null, "L:R256K": null, "L:T495N": null, "L:Y598H": null, "L:A749S": 0.0, "L:I787L": 0.0, "L:L835M": 0.0, "L:I1114V": null, "L:M1225I": null, "L:I1314M": 0.0, "L:L1340F": 0.0, "L:L1438Q": null, "L:D1644E": null, "L:I1653V": null, "L:I1656V": null, "L:K1661N": null, "L:H1690Q": null, "L:N1719S": null, "L:V1721I": null, "L:N1723S": null, "L:E1725G": null, "L:K1726R": null, "L:G1731D": null, "L:C1733Y": null, "L:G1735S": null, "L:G1735D": null, "L:N1748S": null, "L:I1780V": 0.0, "L:S1789F": 0.0, "L:I1800V": 0.0, "L:I1832L": 0.0, "L:V1934I": 0.0, "L:T1942I": 1.0, "L:V1943I": 0.0, "L:V1943D": 0.9952409863471985, "L:K1954Q": 0.07228899747133255, "L:P2013S": 0.0, "L:V2016M": 0.0, "L:K2064R": null, "L:T2069A": null, "L:R2117K": null, "M:M43I": 0.9991739988327026}
Nucleotide mutation frequency
{"T848A": null, "A1360G": 0.0, "A1361G": 0.9907690286636353, "A1420G": 0.0, "C1547G": 0.0, "G1584T": null, "T1756C": null, "T2165C": null, "A2323C": null, "A2412G": null, "C2417T": null, "T2481C": 0.9750000238418579, "T2495C": 0.0, "T2502C": 0.0, "T2514C": 0.0, "C2523T": 0.0, "C2532T": 0.0, "A2544G": 0.0, "C2592T": 0.0, "A3034T": 0.0, "A3299G": 0.0, "G3354A": 0.9991739988327026, "A3407C": 0.0, "A3442C": 0.0, "G3616C": 0.0, "G3616A": 0.0, "T3701C": 0.0, "A3751T": 0.0, "A3766G": 0.010964999906718731, "T4378G": null, "G4399A": null, "T4411C": null, "T4655G": null, "A4660C": null, "G4820A": null, "C4850A": null, "C4863T": null, "C4919T": null, "G4950A": null, "C4952T": null, "T4953C": null, "T4962C": null, "G4967A": null, "G4968A": null, "C4989T": null, "T4995C": 0.0, "C4998T": 0.0, "C5004T": 0.0, "C5010T": 0.9988620281219482, "G5013T": 0.9996209740638733, "A5019G": 0.0, "C5040T": 0.0, "T5043A": 0.0, "T5052A": 0.9992499947547913, "C5058T": 0.0, "C5067T": 0.0, "A5070G": 0.0, "T5076C": 0.9536100029945374, "C5078T": 0.9996259808540344, "C5079T": 0.0, "G5082T": 0.0, "A5183G": 0.0, "A5184G": 0.0, "G5234A": 0.0, "C5268A": 0.0, "A5277G": 0.0, "C5300T": 0.0, "C5301T": 0.0, "C5310T": 0.0, "A5313G": 0.0, "C5316T": 0.0, "G5322T": 0.0, "G5322C": 0.29877200722694397, "G5322A": 0.6540539860725403, "T5325C": 0.0, "C5327T": 0.0, "T5328C": 0.0, "A5342G": 0.0, "G5345A": 0.0, "C5352T": 0.0, "A5366G": 0.0, "A5376C": 0.0, "G5379C": 0.9963740110397339, "G5379T": 0.0, "T5391C": 0.0, "C5393A": 0.0, "C5404G": 0.0, "G5412A": 0.0, "A5415G": 0.0, "C5425A": 0.0, "A5435G": 0.9740099906921387, "A5444C": 0.9863010048866272, "A5444T": 0.0, "A5448T": 0.0, "G5466A": 0.0, "G5466T": 0.0, "T5468C": 0.0, "C5477T": null, "C5478T": null, "T5498C": null, "A5502G": null, "G5507A": null, "T5531C": 0.0, "C5532T": 0.0, "G5534A": 0.0, "A5535T": 0.0, "G5537A": 1.0, "T5540C": 0.0, "C5544T": 0.0, "G5547A": 0.9997559785842896, "G5558A": 0.0, "T5559C": 0.0, "T5561C": 0.0, "G5573A": 0.0, "T5580C": 0.0, "A5586T": 0.0, "C5589T": 0.0, "T5592C": 0.0, "A5606G": 0.9987729787826538, "C5607T": 0.0, "C5607A": 0.0, "A5609G": 0.9970960021018982, "A5612G": 0.0, "G5702T": 0.0, "T5704C": 0.0, "C5731T": 0.0, "C5739T": 0.0, "G5763A": 0.0, "G6003A": null, "C6030T": null, "T6052A": null, "A6060G": null, "G6075A": null, "G6523A": 0.0, "A6672T": 0.0, "T6717G": 0.0, "A7219G": 0.03508799895644188, "C7249T": 0.0, "G7698A": 0.0, "A8160G": 0.22791500389575958, "T8165C": 0.9938409924507141, "A8177G": 0.2256460040807724, "G8180A": 0.20893999934196472, "A8183G": 0.0, "A8189G": 0.0, "A8269G": 0.7931510210037231, "G8329A": 0.9989680051803589, "A8334T": 0.0, "A8383G": null, "C8384A": null, "C8418A": null, "G8421A": null, "A8427G": null, "A8758G": 0.0, "C9043T": null, "A9066G": null, "A9066T": null, "G9178A": null, "G9250A": null, "A9264G": null, "G9298A": null, "C10015A": null, "T10323C": null, "G10776T": 0.0, "A10890C": 0.0, "T11034A": 0.0, "A11871G": null, "G12206A": null, "A12473G": 0.0, "C12549T": 0.0, "T12844A": null, "T13463A": null, "A13488G": null, "A13497G": null, "A13514C": null, "T13601A": null, "A13687G": null, "G13692A": null, "A13699G": null, "A13705G": null, "A13708G": null, "G13723A": null, "G13729A": null, "G13734A": null, "G13735A": null, "A13774G": null, "A13869G": 0.0, "C13897T": 0.0, "A13929G": 0.0, "A14025C": 0.0, "G14331A": 0.0, "C14356T": 1.0, "G14358A": 0.0, "T14359A": 0.9952409863471985, "A14391C": 0.07228899747133255, "C14568T": 0.0, "G14577A": 0.0, "A14722G": null, "A14736G": null, "G14881A": null}

Metadata

Date
2025-01-12
Location
Basel
Primer protocol
Eawag-2024-sequencing of both RSV-A and B
Reference
RSV-A